Glyma12g11780 - SoyBase

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Report for Sequence Feature Glyma12g11780

Feature Type:	gene_model
Chromosome:	Gm12
Start:	9821006
stop:	9825946
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g11780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03520	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr1:877948-879553 REVERSE LENGTH=447	SoyBase	E_val: 0	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG0799	KOG	Branching enzyme	JGI		ISS
PTHR19297	Panther	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	JGI		ISS
PTHR19297:SF2	Panther	GALACTOSYLTRANSFERASE-RELATED	JGI		ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_G7ZX28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase n=1 Tax=Medicago truncatula RepID=G7ZX28_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LRY0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRY0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g11780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g11780

Paralog	Evidence	Comments
Glyma06g45200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g11780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g107700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g11780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g11780

Limit To All Plant Sequences

>Glyma12g11780.1   sequence type=CDS   gene model=Glyma12g11780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAAAAATGTCGGTTCTCATTCAGGAAGGATGTTTAGTGATAAGAAGTGGATTCTCCCCTTTTTTGCAAGTTTGATTATATCTATGAGTCTAGTTCTGACAGCCATTCTTGGATTACTTAGTTCTGATGGCGGGGGAGAGCAGTCACCATTTGAAATCATTTCCTTCAAGAGATCAGAGGATTCAAGTGGATATTTTGTGGAATCAGATATAGAGAAGTCCTTAAATGTTAGTGTGGTGAAAAGGGAGGCACCAAGGTTTGCATATCTTATTTCAGGCACCAAGGGTGATAGTCATAGGATGATGAGGACATTAGAGGCAGTGTACCACCCGAGGAATCAATATATCTTGCACTTAGATCTTGAGGCGCCACCCCGGGAAAGGTTGGAATTGGCAAATGCAGTGAAAGCTGATCCAATATTTCGTGGGGTGGAGAATGTGCGTGTTATGTCTCAATCCAATTTGGTAACTTATAAGGGTCCTACGATGATTGCTTGTACCCTCCAAGCTATTGCAATATTGTTGAAGGAAAGTTCAGAGTGGGACTGGTTTATTAACCTCAGTGCCTCAGATTATCCCCTTATGACACAGGATGATTTGCTTCATGTTTTCTCAAATCTGTCAAGAAATCTCAATTTCATTGAACATACACGCATTGCTGGTTGGAAACTGAACCAAAGAGCAAGACCCATCATTATTGACCCTGCTCTTTACTTATCAAAGAAATCTGATTTAGCATTGACTACTCAAAGAAGAACACTTCCAACATCTTTTAAACTGTTTACTGGTTCAGCTTGGGTTGTACTGACTCGGTCCTTTGTGGAGTACTGCATATGGGGATGGGATAATTTTCCACGGACTATGCTAATGTATTATACAAATTTTATCTCCTCGCCAGAGGGATATTTTCACACTGTCATTTGTAACACTGAGGAATTCCATCACACGGCGATAAACCACGATCTTCACTACATTGCTTGGGACACTCCTCCAAAGCAGCATCCCATCTCTTTAACTGTGAAGGACTTTGACAAAATGGTTAAAAGCAAGGCACTCTTTGCGCGCAAATTTGCAAAGGAGGATCCAGTGTTAGACAAGATTGACAAAGAACTTCTGGGGCGCACACATAGATTTTCACCTGGTGCATGGTGTGTTGGGAACACAGATGGTGGGGCTGACCCTTGTTCTGTTCGTGGCAATGATACAATGTTTAGGCCAGGACCTGGTGCTGAGAGGCTACGTGAGCTGCTTCAGGTGCTGTTATCTAAAGAATCTCTAAGCAAGCAGTGTTTGTGA

Predicted protein sequences of Glyma12g11780

Limit To All Plant Sequences

>Glyma12g11780.1   sequence type=predicted peptide   gene model=Glyma12g11780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKNVGSHSGRMFSDKKWILPFFASLIISMSLVLTAILGLLSSDGGGEQSPFEIISFKRSEDSSGYFVESDIEKSLNVSVVKREAPRFAYLISGTKGDSHRMMRTLEAVYHPRNQYILHLDLEAPPRERLELANAVKADPIFRGVENVRVMSQSNLVTYKGPTMIACTLQAIAILLKESSEWDWFINLSASDYPLMTQDDLLHVFSNLSRNLNFIEHTRIAGWKLNQRARPIIIDPALYLSKKSDLALTTQRRTLPTSFKLFTGSAWVVLTRSFVEYCIWGWDNFPRTMLMYYTNFISSPEGYFHTVICNTEEFHHTAINHDLHYIAWDTPPKQHPISLTVKDFDKMVKSKALFARKFAKEDPVLDKIDKELLGRTHRFSPGAWCVGNTDGGADPCSVRGNDTMFRPGPGAERLRELLQVLLSKESLSKQCL*

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